Detailed information of SNP:
|
SNP ID:
sf1221499823(Gbrowse)
Chromosome: chr12 Position: 21499823 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1265 | 93.44% | 6.56% |
| All Indica | 710 | 88.45% | 11.55% |
| All Japonica | 438 | 99.77% | 0.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 77.91% | 22.09% |
| Indica II | 187 | 100.00% | 0.00% |
| Indica Intermediate | 188 | 95.74% | 4.26% |
| Temperate Japonica | 293 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221499823 | C->T | LOC_Os12g35410(LOC_Os12g35410.1) | Non-Synonymous SNP |