Detailed information of SNP:
|
SNP ID:
sf1221536195(Gbrowse)
Chromosome: chr12 Position: 21536195 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.17% | 13.83% |
| All Indica | 798 | 82.96% | 17.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221536195 | A->G | LOC_Os12g35465(LOC_Os12g35465.1) | INTRON |