Detailed information of SNP:
|
SNP ID:
sf1221548821(Gbrowse)
Chromosome: chr12 Position: 21548821 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 72.86% | 27.14% |
| All Indica | 794 | 98.49% | 1.51% |
| All Japonica | 496 | 30.85% | 69.15% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221548821 | T->G | INTERGENIC | None |