Detailed information of SNP:
|
SNP ID:
sf1221550968(Gbrowse)
Chromosome: chr12 Position: 21550968 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.54% | 18.46% |
| All Indica | 799 | 74.34% | 25.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221550968 | C->T | INTERGENIC | None |