Detailed information of SNP:
|
SNP ID:
sf1221560634(Gbrowse)
Chromosome: chr12 Position: 21560634 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 77.15% | 22.85% |
| All Indica | 799 | 67.08% | 32.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221560634 | G->C | INTERGENIC | None |