Detailed information of SNP:
|
SNP ID:
sf1221587394(Gbrowse)
Chromosome: chr12 Position: 21587394 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.08% | 26.92% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 31.39% | 68.61% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221587394 | T->A | LOC_Os12g35560(LOC_Os12g35560.1) | Non-Synonymous SNP |