Detailed information of SNP:
|
SNP ID:
sf1221588128(Gbrowse)
Chromosome: chr12 Position: 21588128 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 51.07% | 48.93% |
| All Indica | 794 | 69.14% | 30.86% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 59 | 5.08% | 94.92% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 208 | 84.13% | 15.87% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221588128 | A->T | LOC_Os12g35560(LOC_Os12g35560.1) | INTRON |