Detailed information of SNP:
|
SNP ID:
sf1221599299(Gbrowse)
Chromosome: chr12 Position: 21599299 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1181 | 95.34% | 4.66% |
| All Indica | 618 | 94.66% | 5.34% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 21 | 52.38% | 47.62% |
| Indica I | 254 | 98.03% | 1.97% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 157 | 98.73% | 1.27% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 32 | 90.62% | 9.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221599299 | C->A | INTERGENIC | None |