Detailed information of SNP:
|
SNP ID:
sf1221600984(Gbrowse)
Chromosome: chr12 Position: 21600984 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 79.87% | 20.13% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 480 | 48.54% | 51.46% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 326 | 51.84% | 48.16% |
| Tropical Japonica | 86 | 24.42% | 75.58% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221600984 | T->C | INTERGENIC | None |