Detailed information of SNP:
|
SNP ID:
sf1221600992(Gbrowse)
Chromosome: chr12 Position: 21600992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 86.26% | 13.74% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 477 | 64.15% | 35.85% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 320 | 56.25% | 43.75% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221600992 | A->G | INTERGENIC | None |