Detailed information of SNP:
|
SNP ID:
sf1221657635(Gbrowse)
Chromosome: chr12 Position: 21657635 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 74.53% | 25.47% |
| All Indica | 787 | 76.87% | 23.13% |
| All Japonica | 473 | 80.34% | 19.66% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 364 | 75.55% | 24.45% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 316 | 79.75% | 20.25% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 64 | 71.88% | 28.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221657635 | A->C | INTERGENIC | None |