Detailed information of SNP:
|
SNP ID:
sf1221660993(Gbrowse)
Chromosome: chr12 Position: 21660993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 97.86% | 2.14% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 479 | 93.95% | 6.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 92.83% | 7.17% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221660993 | G->A | LOC_Os12g35680(LOC_Os12g35680.1) | INTRON |