Detailed information of SNP:
|
SNP ID:
sf1221664964(Gbrowse)
Chromosome: chr12 Position: 21664964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 75.04% | 24.96% |
| All Indica | 791 | 64.98% | 35.02% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 368 | 41.85% | 58.15% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221664964 | G->A | INTERGENIC | None |