Detailed information of SNP:
|
SNP ID:
sf1221665487(Gbrowse)
Chromosome: chr12 Position: 21665487 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.37% | 3.63% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 58 | 51.72% | 48.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221665487 | G->A | INTERGENIC | None |