Detailed information of SNP:
|
SNP ID:
sf1221665769(Gbrowse)
Chromosome: chr12 Position: 21665769 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.00% | 3.00% |
| All Indica | 793 | 99.62% | 0.38% |
| All Japonica | 494 | 97.57% | 2.43% |
| Aus | 56 | 55.36% | 44.64% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221665769 | T->A | INTERGENIC | None |