Detailed information of SNP:
|
SNP ID:
sf1221685144(Gbrowse)
Chromosome: chr12 Position: 21685144 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 79.73% | 20.27% |
| All Indica | 779 | 67.91% | 32.09% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 361 | 43.21% | 56.79% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 79.13% | 20.87% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221685144 | G->A | INTERGENIC | None |