Detailed information of SNP:
|
SNP ID:
sf1221685762(Gbrowse)
Chromosome: chr12 Position: 21685762 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 70.70% | 29.30% |
| All Indica | 762 | 92.65% | 7.35% |
| All Japonica | 496 | 36.69% | 63.31% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 358 | 93.30% | 6.70% |
| Indica II | 199 | 91.96% | 8.04% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 334 | 32.04% | 67.96% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221685762 | A->G | INTERGENIC | None |