Detailed information of SNP:
|
SNP ID:
sf1221703139(Gbrowse)
Chromosome: chr12 Position: 21703139 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 73.19% | 26.81% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 497 | 35.61% | 64.39% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221703139 | A->G | INTERGENIC | None |