Detailed information of SNP:
|
SNP ID:
sf1221705428(Gbrowse)
Chromosome: chr12 Position: 21705428 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 50.15% | 49.85% |
| All Indica | 768 | 48.57% | 51.43% |
| All Japonica | 452 | 46.24% | 53.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 356 | 37.64% | 62.36% |
| Indica II | 208 | 67.79% | 32.21% |
| Indica Intermediate | 204 | 48.04% | 51.96% |
| Temperate Japonica | 305 | 56.72% | 43.28% |
| Tropical Japonica | 85 | 24.71% | 75.29% |
| Japonica Intermediate | 62 | 24.19% | 75.81% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221705428 | A->G | LOC_Os12g35720(LOC_Os12g35720.1) | INTRON |