Detailed information of SNP:
|
SNP ID:
sf1221706359(Gbrowse)
Chromosome: chr12 Position: 21706359 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 86.00% | 14.00% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 460 | 60.43% | 39.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 312 | 46.79% | 53.21% |
| Tropical Japonica | 84 | 91.67% | 8.33% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221706359 | A->G | LOC_Os12g35720(LOC_Os12g35720.1) | Non-Synonymous SNP |