Detailed information of SNP:
|
SNP ID:
sf1221707821(Gbrowse)
Chromosome: chr12 Position: 21707821 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 79.97% | 20.03% |
| All Indica | 727 | 82.94% | 17.06% |
| All Japonica | 485 | 71.34% | 28.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 324 | 80.86% | 19.14% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 195 | 78.97% | 21.03% |
| Temperate Japonica | 329 | 73.86% | 26.14% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 63 | 42.86% | 57.14% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221707821 | C->T | LOC_Os12g35720(LOC_Os12g35720.1) | Non-Synonymous SNP |