Detailed information of SNP:
|
SNP ID:
sf1221742514(Gbrowse)
Chromosome: chr12 Position: 21742514 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 80.40% | 19.60% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 442 | 47.74% | 52.26% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 291 | 41.92% | 58.08% |
| Tropical Japonica | 87 | 43.68% | 56.32% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221742514 | T->C | INTERGENIC | None |