Detailed information of SNP:
|
SNP ID:
sf1221757707(Gbrowse)
Chromosome: chr12 Position: 21757707 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 75.07% | 24.93% |
| All Indica | 792 | 63.76% | 36.24% |
| All Japonica | 481 | 88.36% | 11.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 52.43% | 47.57% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 326 | 94.79% | 5.21% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221757707 | G->C | LOC_Os12g35779(LOC_Os12g35779.1) | INTRON |