Detailed information of SNP:
|
SNP ID:
sf1221758643(Gbrowse)
Chromosome: chr12 Position: 21758643 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 798 | 63.41% | 36.59% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221758643 | G->A | INTERGENIC | None |