Detailed information of SNP:
|
SNP ID:
sf1221759223(Gbrowse)
Chromosome: chr12 Position: 21759223 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.67% | 28.33% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 19.40% | 80.60% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221759223 | T->C | INTERGENIC | None |