Detailed information of SNP:



SNP ID: sf1221794364(Gbrowse)

Chromosome: chr12

Position: 21794364 		Major allele: G

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1406 92.32% 7.68%
All Indica799 99.75% 0.25%
All Japonica488 78.89% 21.11%
Aus66 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica327 72.17% 27.83%
Tropical Japonica93 94.62% 5.38%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 92.31% 7.69%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1221794364 C->G LOC_Os12g35810(LOC_Os12g35810.1) Non-Synonymous SNP