Detailed information of SNP:
|
SNP ID:
sf1221817711(Gbrowse)
Chromosome: chr12 Position: 21817711 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 88.79% | 11.21% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 61 | 21.31% | 78.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221817711 | A->T | INTERGENIC | None |