Detailed information of SNP:
|
SNP ID:
sf1221821682(Gbrowse)
Chromosome: chr12 Position: 21821682 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221821682 | T->C | INTERGENIC | None |