Detailed information of SNP:
|
SNP ID:
sf1221824111(Gbrowse)
Chromosome: chr12 Position: 21824111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 93.41% | 6.59% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 491 | 92.67% | 7.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 65 | 70.77% | 29.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221824111 | C->T | INTERGENIC | None |