Detailed information of SNP:
|
SNP ID:
sf1221826464(Gbrowse)
Chromosome: chr12 Position: 21826464 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 54.25% | 45.75% |
| All Indica | 793 | 83.86% | 16.14% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221826464 | A->G | LOC_Os12g35880(LOC_Os12g35880.1) | INTRON |