Detailed information of SNP:
|
SNP ID:
sf1221827058(Gbrowse)
Chromosome: chr12 Position: 21827058 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1350 | 54.59% | 45.41% |
| All Indica | 733 | 28.65% | 71.35% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 334 | 29.04% | 70.96% |
| Indica II | 198 | 32.83% | 67.17% |
| Indica Intermediate | 201 | 23.88% | 76.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221827058 | T->C | LOC_Os12g35880(LOC_Os12g35880.1) | INTRON |