Detailed information of SNP:
|
SNP ID:
sf1221835660(Gbrowse)
Chromosome: chr12 Position: 21835660 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 798 | 77.69% | 22.31% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221835660 | C->T | INTERGENIC | None |