Detailed information of SNP:
|
SNP ID:
sf1221853087(Gbrowse)
Chromosome: chr12 Position: 21853087 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.27% | 40.73% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221853087 | T->C | INTERGENIC | None |