Detailed information of SNP:
|
SNP ID:
sf1221858842(Gbrowse)
Chromosome: chr12 Position: 21858842 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 51.49% | 48.51% |
| All Indica | 796 | 21.23% | 78.77% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 32.62% | 67.38% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 209 | 18.18% | 81.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221858842 | A->G | INTERGENIC | None |