Detailed information of SNP:
|
SNP ID:
sf1221868484(Gbrowse)
Chromosome: chr12 Position: 21868484 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.79% | 12.21% |
| All Indica | 797 | 94.86% | 5.14% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221868484 | C->A | INTERGENIC | None |