Detailed information of SNP:
|
SNP ID:
sf1221870276(Gbrowse)
Chromosome: chr12 Position: 21870276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 59.96% | 40.04% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 485 | 4.12% | 95.88% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221870276 | T->C | INTERGENIC | None |