Detailed information of SNP:
|
SNP ID:
sf1221898085(Gbrowse)
Chromosome: chr12 Position: 21898085 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 61.70% | 38.30% |
| All Indica | 790 | 33.04% | 66.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 368 | 8.97% | 91.03% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221898085 | A->G | INTERGENIC | None |