Detailed information of SNP:
|
SNP ID:
sf1221965805(Gbrowse)
Chromosome: chr12 Position: 21965805 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 96.65% | 3.35% |
| All Indica | 787 | 94.66% | 5.34% |
| All Japonica | 478 | 99.79% | 0.21% |
| Aus | 55 | 94.55% | 5.45% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 98.77% | 1.23% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221965805 | C->T | INTERGENIC | None |