Detailed information of SNP:
|
SNP ID:
sf1222038277(Gbrowse)
Chromosome: chr12 Position: 22038277 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 91.07% | 8.93% |
| All Indica | 759 | 94.60% | 5.40% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 176 | 96.59% | 3.41% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222038277 | G->A | INTERGENIC | None |