Detailed information of SNP:
|
SNP ID:
sf1222066968(Gbrowse)
Chromosome: chr12 Position: 22066968 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1246 | 67.34% | 32.66% |
| All Indica | 764 | 88.61% | 11.39% |
| All Japonica | 386 | 22.02% | 77.98% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 347 | 97.98% | 2.02% |
| Indica II | 209 | 68.42% | 31.58% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 300 | 16.00% | 84.00% |
| Tropical Japonica | 49 | 42.86% | 57.14% |
| Japonica Intermediate | 37 | 43.24% | 56.76% |
| Group VI/Aromatic | 3 | 0.00% | 100.00% |
| Intermediate | 33 | 51.52% | 48.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222066968 | A->G | INTERGENIC | None |