Detailed information of SNP:
|
SNP ID:
sf1222162315(Gbrowse)
Chromosome: chr12 Position: 22162315 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 72.57% | 27.43% |
| All Indica | 791 | 94.82% | 5.18% |
| All Japonica | 494 | 31.58% | 68.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 333 | 11.11% | 88.89% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222162315 | T->G | INTERGENIC | None |