Detailed information of SNP:
|
SNP ID:
sf1222171081(Gbrowse)
Chromosome: chr12 Position: 22171081 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 85.63% | 14.37% |
| All Indica | 794 | 93.95% | 6.05% |
| All Japonica | 497 | 75.65% | 24.35% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222171081 | T->G | INTERGENIC | None |