Detailed information of SNP:



SNP ID: sf1222172222(Gbrowse)

Chromosome: chr12

Position: 22172222
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1407 97.16% 2.84%
All Indica799 100.00% 0.00%
All Japonica487 92.61% 7.39%
Aus67 94.03% 5.97%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica327 91.13% 8.87%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate66 95.45% 4.55%
Group VI/Aromatic13 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1222172222 C->T INTERGENIC None