Detailed information of SNP:
|
SNP ID:
sf1222183735(Gbrowse)
Chromosome: chr12 Position: 22183735 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.76% | 21.24% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 50.10% | 49.90% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 34.03% | 65.97% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222183735 | A->G | LOC_Os12g36270(LOC_Os12g36270.1) | Non-Synonymous SNP |