Detailed information of SNP:
|
SNP ID:
sf1222188415(Gbrowse)
Chromosome: chr12 Position: 22188415 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1196 | 64.46% | 35.54% |
| All Indica | 585 | 56.24% | 43.76% |
| All Japonica | 492 | 77.24% | 22.76% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 250 | 54.80% | 45.20% |
| Indica II | 167 | 59.28% | 40.72% |
| Indica Intermediate | 168 | 55.36% | 44.64% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 90 | 34.44% | 65.56% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222188415 | T->C | INTERGENIC | None |