Detailed information of SNP:
|
SNP ID:
sf1222188509(Gbrowse)
Chromosome: chr12 Position: 22188509 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 94.82% | 5.18% |
| All Indica | 719 | 90.96% | 9.04% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 91.99% | 8.01% |
| Indica II | 198 | 87.88% | 12.12% |
| Indica Intermediate | 184 | 92.39% | 7.61% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222188509 | G->A | INTERGENIC | None |