Detailed information of SNP:
|
SNP ID:
sf1222197580(Gbrowse)
Chromosome: chr12 Position: 22197580 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.28% | 19.72% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 497 | 49.90% | 50.10% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 34.03% | 65.97% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222197580 | T->C | LOC_Os12g36310(LOC_Os12g36310.1) | INTRON |