Detailed information of SNP:
|
SNP ID:
sf1222207544(Gbrowse)
Chromosome: chr12 Position: 22207544 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 50.89% | 49.11% |
| All Indica | 789 | 83.65% | 16.35% |
| All Japonica | 488 | 5.74% | 94.26% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 206 | 81.55% | 18.45% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 328 | 3.05% | 96.95% |
| Tropical Japonica | 92 | 10.87% | 89.13% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222207544 | G->A | INTERGENIC | None |