Detailed information of SNP:
|
SNP ID:
sf1222224519(Gbrowse)
Chromosome: chr12 Position: 22224519 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 79.70% | 20.30% |
| All Indica | 795 | 91.82% | 8.18% |
| All Japonica | 492 | 62.80% | 37.20% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 332 | 75.60% | 24.40% |
| Tropical Japonica | 92 | 32.61% | 67.39% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222224519 | A->G | INTERGENIC | None |