Detailed information of SNP:
|
SNP ID:
sf1222262337(Gbrowse)
Chromosome: chr12 Position: 22262337 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 54.27% | 45.73% |
| All Indica | 771 | 42.41% | 57.59% |
| All Japonica | 492 | 72.15% | 27.85% |
| Aus | 53 | 47.17% | 52.83% |
| Indica I | 369 | 38.75% | 61.25% |
| Indica II | 201 | 45.27% | 54.73% |
| Indica Intermediate | 201 | 46.27% | 53.73% |
| Temperate Japonica | 332 | 71.39% | 28.61% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222262337 | C->T | INTERGENIC | None |